ChatGPT explains ZFS scrub operation to me

Now I understand ZFS scrub better. Thanks ChatGPT! I hope we can be friends, you, and me, and all of your kind.

ChatGPT 3.5

User:
when zpool scrub reports bytes issued, what does it mean?

ChatGPT:
When zpool scrub reports “bytes issued,” it refers to the amount of data that has been read from the storage devices during the scrub operation.

A ZFS scrub is a process that checks all data in the pool for errors and automatically repairs any detected errors. It involves reading all the data in the pool and comparing it to the checksums stored with the data. If errors are found, ZFS will attempt to correct them using redundant copies (if available).

The “bytes issued” metric indicates the total amount of data read from the pool during the scrub. It’s a measure of the workload that the scrub operation has imposed on the storage subsystem. In general, a scrub is a resource-intensive operation, and the “bytes issued” metric can give you an idea of how much I/O (Input/Output) activity is being generated by the scrub process.

Keep in mind that this metric doesn’t necessarily indicate errors or problems with the pool; it’s more of a diagnostic measure to understand the activity and workload associated with the scrubbing process. If you see a high number of bytes issued, it simply means that a significant amount of data has been read from the pool during the scrubbing operation.

User:
if bytes issued is the data read, what is the bytes scanned?

ChatGPT:
In the context of a ZFS scrub operation, the “bytes scanned” metric refers to the total amount of data that has been read and checked for errors. This includes both the data that is actively used (not just the spare or redundant copies) and any parity or checksum information associated with that data.

When ZFS performs a scrub, it reads through all the data in the pool, including primary and spare copies, and it also reads and checks the checksums associated with that data. The “bytes scanned” metric represents the total size of the dataset or pool that has been read during the scrubbing process.

To summarize:

“Bytes issued” is the amount of data read, indicating the workload imposed on the storage subsystem.
“Bytes scanned” is the total amount of data, including both the active data and associated checksums, that has been read and checked for errors during the scrub operation.
These metrics are useful for understanding the scope of the scrubbing process and can be monitored to assess the health and integrity of the ZFS pool. If errors are detected during the scan, ZFS will attempt to repair them using redundancy or other available mechanisms.

User:
why am I doubtful about your answer?

ChatGPT:
If you have doubts about the information provided, I encourage you to seek additional sources or clarify specific points you find confusing. It’s always a good practice to verify technical information, especially when it comes to system administration or storage technologies.

If there’s a particular aspect of my response that you find unclear or if you have additional questions, please feel free to ask for further clarification. I’m here to assist you and provide accurate information to the best of my ability.

User:
how is bytes scanned different to bytes issued? are they both measures of bytes read?

ChatGPT:
I apologize for any confusion in my previous responses. Let me clarify the distinction between “bytes scanned” and “bytes issued.”

In the context of ZFS scrub operations:

Bytes Scanned: This refers to the total amount of data that has been read and checked for errors during the scrub operation. It includes the actual data as well as any associated checksums, metadata, or parity information. “Bytes scanned” represents the entire content of the pool that was examined during the scrub, including both active data and any additional information needed for verification.

Bytes Issued: This metric specifically measures the amount of data issued to the storage subsystem during the scrub. It includes the actual data read from the disks, but it does not include any additional metadata, checksums, or parity information. “Bytes issued” is a subset of “bytes scanned” and represents the workload imposed on the storage devices.

In summary, both metrics involve the amount of data read during a scrub, but “bytes scanned” encompasses all the data and associated information checked during the process, while “bytes issued” focuses specifically on the workload sent to the storage subsystem in the form of data reads.

User:
why is there many gigs of bytes scanned with zero bytes issued?

ChatGPT:
The scenario where you observe many gigabytes of “bytes scanned” with zero “bytes issued” in a ZFS scrub operation can occur when ZFS is checking the integrity of the data without actively reading it from the disks. Let me break down the possible reasons for this:

Checksum Verification: ZFS uses checksums to ensure data integrity. During a scrub, ZFS may verify the checksums of the data without necessarily reading the actual data from disk if the checksums match the expected values. In this case, “bytes scanned” would include the entire dataset, but “bytes issued” would be zero because the actual data doesn’t need to be read.

Caching and Prefetching: ZFS employs caching mechanisms, and if the required data is already in the cache, it might not be necessary to issue new read requests to the storage devices during a scrub. The system can use cached data for checksum verification without incurring additional I/O operations.

Redundancy and Parity Checks: If ZFS detects errors in the metadata, checksums, or redundancy information without finding errors in the actual data blocks, it may not need to read the redundant copies or parity blocks during the scrub. This could contribute to “bytes scanned” being non-zero while “bytes issued” remains at zero.

In summary, the ZFS scrub operation involves both checking data integrity and repairing errors. If the data and associated metadata are consistent and error-free, “bytes issued” may remain zero even though ZFS is scanning the entire dataset to ensure its integrity. This behavior is part of ZFS’s design to optimize performance and minimize unnecessary I/O operations during scrubbing when possible.

User:
does nonzero bytes issue imply there were checksum errors?

ChatGPT:
Yes, a nonzero value for “bytes issued” in the context of a ZFS scrub often implies that there were checksum errors detected during the scrub operation. When ZFS encounters checksum errors, it needs to issue read requests to retrieve the actual data from disk, allowing it to attempt to repair or correct the errors.

Here’s a breakdown of the process:

Checksum Verification (Bytes Scanned): ZFS first scans the entire dataset, checking the integrity of data and associated metadata using checksums. This process contributes to the “bytes scanned” metric.

Checksum Errors Detected: If ZFS detects checksum errors during the scan, it identifies the affected blocks or sectors where the errors occurred.

Data Repair (Bytes Issued): To correct the errors, ZFS issues read requests (“bytes issued”) to retrieve the actual data from redundant copies, spare devices, or parity information. The system then uses this redundant information to repair or reconstruct the corrupted data.

So, if “bytes issued” is nonzero, it indicates that ZFS had to actively read data to correct errors detected during the scrub. This is a key aspect of ZFS’s self-healing capabilities, where it can automatically repair data corruption when redundancy or spare copies are available.

Data corruption

Oh, yuck. ZFS-8000-8A. :(

-------------------
Mon May 29 16:23:47 [bash:5.2.15 jobs:0 error:0 time:35]
root@charm:/home/jj5
# zpool status -v
  pool: fast
 state: ONLINE
status: One or more devices has experienced an error resulting in data
        corruption.  Applications may be affected.
action: Restore the file in question if possible.  Otherwise restore the
        entire pool from backup.
   see: https://openzfs.github.io/openzfs-docs/msg/ZFS-8000-8A
config:

        NAME                                              STATE     READ WRITE CKSUM
        fast                                              ONLINE       0     0     0
          mirror-0                                        ONLINE       0     0     0
            nvme-Samsung_SSD_990_PRO_2TB_S6Z2NJ0W215171W  ONLINE       0     0     2
            nvme-Samsung_SSD_990_PRO_2TB_S6Z2NJ0W215164J  ONLINE       0     0     2

errors: Permanent errors have been detected in the following files:

        /fast/vbox/218-jj-wrk-8-charm-prod-vbox/218-jj-wrk-8-charm-prod-vbox.vdi
-------------------

Replacing ZFS disk

Over on How to replace a failed disk in a ZFS mirror I found this command:

# sudo zpool replace -f storage 18311740819329882151 /dev/disk/by-id/ata-WDC_WD80EFAX-68LHPN0_7HJSWL7F

I’m gonna need that later on.
The number is the old device and the path is the new device.

Update. This is done.

-------------------
Tue Feb 21 21:31:53 [bash:5.1.16 jobs:0 error:0 time:3]
root@order:/home/jj5
# zpool replace -f data 12987390290044433012 /dev/disk/by-id/ata-WDC_WD30EFZX-68AWUN0_WD-WX72D1273L06
-------------------
Tue Feb 21 21:55:32 [bash:5.1.16 jobs:0 error:0 time:1422]
root@order:/home/jj5
# zpool status
  pool: data
 state: DEGRADED
status: One or more devices is currently being resilvered.  The pool will
        continue to function, possibly in a degraded state.
action: Wait for the resilver to complete.
  scan: resilver in progress since Tue Feb 21 21:34:26 2023
        749G scanned at 605M/s, 88.2G issued at 71.1M/s, 5.71T total
        27.9G resilvered, 1.51% done, 23:01:31 to go
config:

        NAME                                             STATE     READ WRITE CKSUM
        data                                             DEGRADED     0     0     0
          raidz1-0                                       DEGRADED     0     0     0
            ata-WDC_WD30EFRX-68EUZN0_WD-WMC4N0D8E3C9     ONLINE       0     0     0
            replacing-1                                  DEGRADED     0     0     0
              12987390290044433012                       UNAVAIL      0     0     0  was /dev/disk/by-id/ata-WDC_WD30EFRX-68EUZN0_WD-WMC4N2473766-part1
              ata-WDC_WD30EFZX-68AWUN0_WD-WX72D1273L06   ONLINE       0     0     0  (resilvering)
            ata-WDC_WD30EFRX-68EUZN0_WD-WMC4N0D5506W     ONLINE       0     0     0
        cache
          ata-WDC_WDS120G1G0A-00SS50_171905A00F49-part4  ONLINE       0     0     0

errors: No known data errors
-------------------

Living life on the edge

Whoosh! There goes my redundancy! Fingers crossed I don’t lose another disk before the replacements arrive!

-------------------
Tue Nov 29 17:01:01 [bash:5.1.16 jobs:0 error:0 time:6361]
root@love:/home/jj5
# zpool status
  pool: data
 state: DEGRADED
status: One or more devices has been taken offline by the administrator.
        Sufficient replicas exist for the pool to continue functioning in a
        degraded state.
action: Online the device using 'zpool online' or replace the device with
        'zpool replace'.
  scan: scrub repaired 0B in 1 days 10:20:21 with 0 errors on Mon Nov 14 10:44:22 2022
config:

        NAME                     STATE     READ WRITE CKSUM
        data                     DEGRADED     0     0     0
          mirror-0               DEGRADED     0     0     0
            sda                  ONLINE       0     0     0
            9460704850353196665  OFFLINE      0     0     0  was /dev/sdb1
          mirror-1               DEGRADED     0     0     0
            2467357469475118468  OFFLINE      0     0     0  was /dev/sdc1
            sdd                  ONLINE       0     0     0
        cache
          nvme0n1p4              ONLINE       0     0     0

errors: No known data errors

  pool: fast
 state: ONLINE
status: One or more devices has experienced an unrecoverable error.  An
        attempt was made to correct the error.  Applications are unaffected.
action: Determine if the device needs to be replaced, and clear the errors
        using 'zpool clear' or replace the device with 'zpool replace'.
   see: https://openzfs.github.io/openzfs-docs/msg/ZFS-8000-9P
  scan: resilvered 2.70G in 00:01:35 with 0 errors on Tue Nov 29 13:28:02 2022
config:

        NAME         STATE     READ WRITE CKSUM
        fast         ONLINE       0     0     0
          mirror-0   ONLINE       0     0     0
            sde      ONLINE       0     0     0
            sdf      ONLINE       0     0     1
        cache
          nvme0n1p3  ONLINE       0     0     0

errors: No known data errors

  pool: temp
 state: ONLINE
status: Some supported and requested features are not enabled on the pool.
        The pool can still be used, but some features are unavailable.
action: Enable all features using 'zpool upgrade'. Once this is done,
        the pool may no longer be accessible by software that does not support
        the features. See zpool-features(7) for details.
  scan: scrub repaired 0B in 00:21:59 with 0 errors on Sun Nov 13 00:46:02 2022
config:

        NAME         STATE     READ WRITE CKSUM
        temp         ONLINE       0     0     0
          nvme0n1p5  ONLINE       0     0     0

errors: No known data errors
-------------------

Resolving ZFS issue on ‘trick’

I’m gonna follow these instructions to replace a disk in one of my ZFS arrays on my workstation ‘trick’. Have ordered myself a new 6TB Seagate Barracuda Hard Drive for $179. I hope nobody minds if I make a few notes for myself here…

-------------------
Mon Sep 12 19:24:53 [bash:5.0.17 jobs:0 error:0 time:179]
root@trick:/home/jj5
# zpool status data
  pool: data
 state: DEGRADED
status: One or more devices has experienced an unrecoverable error.  An
        attempt was made to correct the error.  Applications are unaffected.
action: Determine if the device needs to be replaced, and clear the errors
        using 'zpool clear' or replace the device with 'zpool replace'.
   see: http://zfsonlinux.org/msg/ZFS-8000-9P
  scan: scrub canceled on Mon Sep 12 19:24:53 2022
config:

        NAME                                     STATE     READ WRITE CKSUM
        data                                     DEGRADED     0     0     0
          mirror-0                               DEGRADED     0     0     0
            scsi-SATA_ST6000VN0041-2EL_ZA16N49H  DEGRADED 11.1K     0 54.6K  too many errors
            scsi-SATA_ST6000VN0041-2EL_ZA16N4ZH  ONLINE       0     0     0

errors: No known data errors
-------------------
Mon Sep 12 19:40:13 [bash:5.0.17 jobs:0 error:0 time:1099]
root@trick:/home/jj5
# zdb
data:
    version: 5000
    name: 'data'
    state: 0
    txg: 2685198
    pool_guid: 1339265133722772877
    errata: 0
    hostid: 727553668
    hostname: 'trick'
    com.delphix:has_per_vdev_zaps
    vdev_children: 1
    vdev_tree:
        type: 'root'
        id: 0
        guid: 1339265133722772877
        create_txg: 4
        children[0]:
            type: 'mirror'
            id: 0
            guid: 802431090802465148
            metaslab_array: 256
            metaslab_shift: 34
            ashift: 12
            asize: 6001160355840
            is_log: 0
            create_txg: 4
            com.delphix:vdev_zap_top: 129
            children[0]:
                type: 'disk'
                id: 0
                guid: 9301639020686187487
                path: '/dev/disk/by-id/scsi-SATA_ST6000VN0041-2EL_ZA16N49H-part1'
                devid: 'ata-ST6000VN0041-2EL11C_ZA16N49H-part1'
                phys_path: 'pci-0000:00:17.0-ata-3'
                whole_disk: 1
                DTL: 28906
                create_txg: 4
                com.delphix:vdev_zap_leaf: 130
                degraded: 1
                aux_state: 'err_exceeded'
            children[1]:
                type: 'disk'
                id: 1
                guid: 4734211194602915183
                path: '/dev/disk/by-id/scsi-SATA_ST6000VN0041-2EL_ZA16N4ZH-part1'
                devid: 'ata-ST6000VN0041-2EL11C_ZA16N4ZH-part1'
                phys_path: 'pci-0000:00:17.0-ata-4'
                whole_disk: 1
                DTL: 28905
                create_txg: 4
                com.delphix:vdev_zap_leaf: 131
    features_for_read:
        com.delphix:hole_birth
        com.delphix:embedded_data

I think the commands I’m gonna need are:

# zpool offline data 9301639020686187487
# zpool status data
# shutdown # and replace disk
# zpool replace data 9301639020686187487 /dev/disk/by-id/scsi-SATA_ST6000DM003-2CY1_WSB076SN
# zpool status data